Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs33979898 | chr10:88717692 | TG/T | 9.57E-5 | 468 | 15.17 | 16.67 | 13.48 | KM Plot |
| THCA | rs34001827 | chr16:20675067 | CT/C | 1.24E-6 | 487 | 15.97 | 15.08 | 42.77 | KM Plot |
| THCA | rs34002415 | chr3:14576471 | C/T | 8.99E-6 | 468 | 16.4 | 15 | 14.52 | KM Plot |
| THCA | rs34010717 | chr1:184082133 | T/C | 2.35E-6 | 480 | 15.65 | 17.58 | 25.93 | KM Plot |
| THCA | rs34011070 | chr3:14573909 | G/A | 1.2E-6 | 488 | 16.67 | 15 | 14.52 | KM Plot |
| THCA | rs34014764 | chr16:20610236 | A/C | 4.34E-6 | 483 | 15.93 | 17.55 | 14.27 | KM Plot |
| THCA | rs34016041 | chr6:153278695 | A/T | 0 | 486 | 15.17 | 18.33 | 6.92 | KM Plot |
| THCA | rs34079307 | chr19:49352301 | C/T | 8.73E-5 | 480 | 15.93 | 16.63 | 17.77 | KM Plot |
| THCA | rs34087879 | chr1:22457611 | G/A | 2.79E-7 | 473 | 15.67 | 18.2 | 6.72 | KM Plot |
| THCA | rs34124220 | chr11:4092147 | A/AG | 7.99E-5 | 485 | 19.87 | 14.98 | 15.9 | KM Plot |
| THCA | rs34134130 | chr16:20742185 | T/G | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs34145686 | chr10:7852040 | C/T | 5.65E-6 | 488 | 16.02 | 15.9 | 15.7 | KM Plot |
| THCA | rs34154454 | chr16:20725945 | T/C | 5.57E-13 | 486 | 16.07 | 14.8 | 13.6 | KM Plot |
| THCA | rs34160924 | chr16:20773108 | T/G | 3.38E-5 | 490 | 16.37 | 14.63 | 17.65 | KM Plot |
| THCA | rs34205831 | chr14:23214010 | G/A | 9.9E-7 | 487 | 15.17 | 17.07 | 21.67 | KM Plot |